Variant report
| Variant | rs73435810 |
|---|---|
| Chromosome Location | chr7:120083472-120083473 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:120076190..120079219-chr7:120081978..120085148,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:12)
| rs_ID | r2[population] |
|---|---|
| rs57340057 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs61423147 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433885 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73433901 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73435803 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73435836 | 0.90[AFR][1000 genomes] |
| rs73435839 | 0.82[AFR][1000 genomes] |
| rs73435843 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73435844 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73435847 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7783876 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7800592 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1024920 | chr7:120002420-120083753 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 2 | nsv516686 | chr7:120015843-120223084 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 3 | nsv1026821 | chr7:120020317-120190437 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv970423 | chr7:120081849-120085097 | ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:120083200-120083800 | Weak transcription | GM12878-XiMat | blood |
