Variant report

Variant	rs57346285
Chromosome Location	chr9:110438025-110438026
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10119819	0.88[AFR][1000 genomes]
rs57875847	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60813893	0.91[AFR][1000 genomes]
rs73514938	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73514960	0.91[AFR][1000 genomes]
rs73653640	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521747	chr9:110418574-110441113	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110435600-110438200	Enhancers	H1 Cell Line	embryonic stem cell
2	chr9:110435600-110439600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:110436800-110438600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr9:110436800-110438800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr9:110437000-110438600	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:110437200-110438200	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr9:110437200-110444000	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:110437400-110438200	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr9:110437400-110440800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr9:110437600-110444400	Weak transcription	Adipose Nuclei	Adipose
11	chr9:110437800-110440000	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:110437800-110444200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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