Variant report

Variant	rs60813893
Chromosome Location	chr9:110445492-110445493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10119819	0.97[AFR][1000 genomes]
rs12343270	1.00[EUR][1000 genomes]
rs12345789	1.00[EUR][1000 genomes]
rs55685304	1.00[EUR][1000 genomes]
rs56372522	1.00[EUR][1000 genomes]
rs56772234	1.00[EUR][1000 genomes]
rs57346285	0.91[AFR][1000 genomes]
rs57603479	1.00[EUR][1000 genomes]
rs57608579	1.00[EUR][1000 genomes]
rs57875847	0.94[AFR][1000 genomes]
rs58221262	1.00[EUR][1000 genomes]
rs58811653	1.00[EUR][1000 genomes]
rs58884117	1.00[EUR][1000 genomes]
rs59172464	1.00[EUR][1000 genomes]
rs59870347	1.00[EUR][1000 genomes]
rs60310917	1.00[EUR][1000 genomes]
rs60510252	1.00[EUR][1000 genomes]
rs61080976	1.00[EUR][1000 genomes]
rs73514938	1.00[AFR][1000 genomes]
rs73514960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73653640	0.89[AFR][1000 genomes]
rs73653647	1.00[EUR][1000 genomes]
rs73653648	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110444200-110445800	Weak transcription	Right Atrium	heart
2	chr9:110444400-110445600	Weak transcription	Placenta	Placenta
3	chr9:110444400-110448400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:110444600-110445600	Weak transcription	Adipose Nuclei	Adipose
5	chr9:110444600-110445800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:110444600-110446000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:110444800-110445800	Weak transcription	Fetal Muscle Leg	muscle
8	chr9:110444800-110446000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:110444800-110446400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:110445200-110447800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:110445400-110446000	Enhancers	Primary B cells from cord blood	blood
12	chr9:110445400-110446600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr9:110445400-110446600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:110445400-110446600	Enhancers	Fetal Intestine Small	intestine
15	chr9:110445400-110446600	Enhancers	Small Intestine	intestine
16	chr9:110445400-110446600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr9:110445400-110446800	Enhancers	Fetal Intestine Large	intestine
18	chr9:110445400-110446800	Enhancers	Rectal Mucosa Donor 31	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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