Variant report

Variant	rs58221262
Chromosome Location	chr9:110412949-110412950
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12343270	1.00[EUR][1000 genomes]
rs12345789	1.00[EUR][1000 genomes]
rs55685304	1.00[EUR][1000 genomes]
rs56372522	1.00[EUR][1000 genomes]
rs56772234	1.00[EUR][1000 genomes]
rs57603479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57608579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58811653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58884117	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59172464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59870347	1.00[EUR][1000 genomes]
rs60310917	1.00[EUR][1000 genomes]
rs60510252	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60813893	1.00[EUR][1000 genomes]
rs61080976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73653647	1.00[EUR][1000 genomes]
rs73653648	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110408000-110415400	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr9:110409800-110413200	Enhancers	HSMM	muscle
3	chr9:110410000-110413200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:110412000-110413000	Enhancers	Skeletal Muscle Male	skeletal muscle
5	chr9:110412000-110413200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:110412000-110413600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr9:110412200-110413000	Enhancers	Osteobl	bone
8	chr9:110412200-110413200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:110412200-110413200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:110412200-110413200	Enhancers	NH-A	brain
11	chr9:110412400-110413600	Enhancers	HSMMtube	muscle
12	chr9:110412600-110413000	Enhancers	Fetal Muscle Leg	muscle
13	chr9:110412600-110413200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:110412800-110413000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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