Variant report
| Variant | rs60510252 |
|---|---|
| Chromosome Location | chr9:110416463-110416464 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000136826 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs12343270 | 1.00[EUR][1000 genomes] |
| rs12345789 | 1.00[EUR][1000 genomes] |
| rs55685304 | 1.00[EUR][1000 genomes] |
| rs56372522 | 1.00[EUR][1000 genomes] |
| rs56772234 | 1.00[EUR][1000 genomes] |
| rs57603479 | 1.00[EUR][1000 genomes] |
| rs57608579 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58221262 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58811653 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58884117 | 1.00[EUR][1000 genomes] |
| rs59172464 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs59870347 | 1.00[EUR][1000 genomes] |
| rs60310917 | 1.00[EUR][1000 genomes] |
| rs60813893 | 1.00[EUR][1000 genomes] |
| rs61080976 | 0.89[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73653647 | 1.00[EUR][1000 genomes] |
| rs73653648 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831683 | chr9:110275212-110461288 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv893700 | chr9:110365337-110451516 | Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:110413000-110437000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
