Variant report

Variant	rs73653647
Chromosome Location	chr9:110482749-110482750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12343270	1.00[EUR][1000 genomes]
rs12345789	1.00[EUR][1000 genomes]
rs55685304	1.00[EUR][1000 genomes]
rs56372522	1.00[EUR][1000 genomes]
rs56772234	1.00[EUR][1000 genomes]
rs57603479	1.00[EUR][1000 genomes]
rs57608579	1.00[EUR][1000 genomes]
rs58221262	1.00[EUR][1000 genomes]
rs58811653	1.00[EUR][1000 genomes]
rs58884117	1.00[EUR][1000 genomes]
rs59172464	1.00[EUR][1000 genomes]
rs59870347	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60310917	1.00[EUR][1000 genomes]
rs60510252	1.00[EUR][1000 genomes]
rs60813893	1.00[EUR][1000 genomes]
rs61080976	1.00[EUR][1000 genomes]
rs73653648	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1808541	chr9:110444938-110488612	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv427850	chr9:110456613-110632324	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv428221	chr9:110456613-110632324	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110472200-110483000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110475800-110483600	Weak transcription	HMEC	breast
3	chr9:110478200-110484200	Enhancers	Fetal Intestine Small	intestine
4	chr9:110478800-110484200	Enhancers	Fetal Intestine Large	intestine
5	chr9:110479600-110484000	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr9:110480600-110483800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr9:110480800-110484000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:110481800-110482800	Enhancers	Colonic Mucosa	Colon
9	chr9:110482400-110482800	Enhancers	Duodenum Mucosa	Duodenum
10	chr9:110482600-110483000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:110482600-110484200	Enhancers	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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