Variant report

Variant	rs60310917
Chromosome Location	chr9:110437060-110437061
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110434606..110437399-chr9:110437465..110439039,2	MCF-7	breast:
2	chr9:110425959..110427637-chr9:110435730..110438629,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12343270	1.00[EUR][1000 genomes]
rs12345789	1.00[EUR][1000 genomes]
rs55685304	1.00[EUR][1000 genomes]
rs56372522	1.00[EUR][1000 genomes]
rs56772234	1.00[EUR][1000 genomes]
rs57603479	1.00[EUR][1000 genomes]
rs57608579	1.00[EUR][1000 genomes]
rs58221262	1.00[EUR][1000 genomes]
rs58811653	1.00[EUR][1000 genomes]
rs58884117	1.00[EUR][1000 genomes]
rs59172464	1.00[EUR][1000 genomes]
rs59870347	1.00[EUR][1000 genomes]
rs60510252	1.00[EUR][1000 genomes]
rs60813893	1.00[EUR][1000 genomes]
rs61080976	1.00[EUR][1000 genomes]
rs73653647	1.00[EUR][1000 genomes]
rs73653648	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521747	chr9:110418574-110441113	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110435600-110437600	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr9:110435600-110438200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:110435600-110439600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr9:110436000-110437800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr9:110436200-110437200	Enhancers	Fetal Muscle Leg	muscle
6	chr9:110436400-110437800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr9:110436800-110437200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr9:110436800-110437200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr9:110436800-110437200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr9:110436800-110437400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr9:110436800-110437600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr9:110436800-110437600	Enhancers	Adipose Nuclei	Adipose
13	chr9:110436800-110437600	Enhancers	Placenta	Placenta
14	chr9:110436800-110437600	Enhancers	NHDF-Ad	bronchial
15	chr9:110436800-110438600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:110436800-110438800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr9:110437000-110437200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr9:110437000-110437400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
19	chr9:110437000-110437400	Flanking Active TSS	H9 Cell Line	embryonic stem cell
20	chr9:110437000-110437400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:110437000-110437400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr9:110437000-110437400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr9:110437000-110438000	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr9:110437000-110438600	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links