Variant report

Variant	rs73514938
Chromosome Location	chr9:110436606-110436607
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10119819	0.97[AFR][1000 genomes]
rs57346285	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57875847	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60813893	1.00[AFR][1000 genomes]
rs73514960	1.00[AFR][1000 genomes]
rs73653640	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831683	chr9:110275212-110461288	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv893700	chr9:110365337-110451516	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv521747	chr9:110418574-110441113	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110413000-110437000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110435600-110436800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr9:110435600-110437000	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr9:110435600-110437000	Enhancers	H9 Cell Line	embryonic stem cell
5	chr9:110435600-110437600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr9:110435600-110438200	Enhancers	H1 Cell Line	embryonic stem cell
7	chr9:110435600-110439600	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:110436000-110436800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr9:110436000-110437800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr9:110436200-110436800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr9:110436200-110437200	Enhancers	Fetal Muscle Leg	muscle
12	chr9:110436400-110436800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:110436400-110437800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr9:110436600-110436800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr9:110436600-110436800	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr9:110436600-110436800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:110436600-110437000	Active TSS	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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