Variant report

Variant	rs57349371
Chromosome Location	chr7:116459734-116459735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000077063	Chromatin interaction
ENSG00000135269	Chromatin interaction
ENSG00000004866	Chromatin interaction
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57800641	1.00[AMR][1000 genomes]
rs73714372	1.00[AMR][1000 genomes]
rs7805872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116455600-116468400	Weak transcription	Liver	Liver
2	chr7:116459000-116460000	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr7:116459600-116460000	Enhancers	Primary hematopoietic stem cells	blood
4	chr7:116459600-116460000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr7:116459600-116460000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:116459600-116460200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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