Variant report

Variant	rs73714372
Chromosome Location	chr7:116651301-116651302
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr7:116650159-116652411	GM19193	blood:	n/a	chr7:116650710-116650719 chr7:116650710-116650719
2	IKZF1	chr7:116650027-116652497	GM12878	blood:	n/a	n/a
3	POLR2A	chr7:116650803-116652280	GM12891	blood:	n/a	n/a
4	POLR2A	chr7:116650787-116652314	GM12892	blood:	n/a	n/a
5	CHD2	chr7:116650345-116651356	GM12878	blood:	n/a	n/a
6	POLR2A	chr7:116649747-116652373	GM12892	blood:	n/a	n/a
7	TBL1XR1	chr7:116650183-116652798	GM12878	blood:	n/a	n/a
8	MTA3	chr7:116649866-116652811	GM12878	blood:	n/a	n/a
9	POLR2A	chr7:116649779-116652228	GM12892	blood:	n/a	n/a
10	POLR2A	chr7:116650810-116652183	GM12891	blood:	n/a	n/a
11	MAZ	chr7:116651294-116651532	GM12878	blood:	n/a	n/a
12	RELA	chr7:116649862-116652517	GM12891	blood:	n/a	chr7:116650710-116650719 chr7:116650710-116650719
13	POLR2A	chr7:116649746-116652291	GM12878	blood:	n/a	n/a
14	NFATC1	chr7:116650268-116651363	GM12878	blood:	n/a	n/a
15	STAT5A	chr7:116650035-116652410	GM12878	blood:	n/a	chr7:116650166-116650180
16	RELA	chr7:116650206-116652978	GM18505	blood:	n/a	chr7:116650710-116650719 chr7:116650710-116650719
17	RUNX3	chr7:116650135-116652628	GM12878	blood:	n/a	n/a
18	BCLAF1	chr7:116650265-116651392	GM12878	blood:	n/a	chr7:116650709-116650718
19	EP300	chr7:116650268-116652582	GM12878	blood:	n/a	chr7:116652338-116652352 chr7:116650970-116650984 chr7:116652339-116652353 chr7:116650529-116650538
20	MTA3	chr7:116649796-116652623	GM12878	blood:	n/a	n/a
21	POLR2A	chr7:116649779-116652999	GM12878	blood:	n/a	n/a
22	NFIC	chr7:116649213-116652984	GM12878	blood:	n/a	n/a
23	RUNX3	chr7:116649718-116652510	GM12878	blood:	n/a	n/a
24	NFIC	chr7:116648985-116653070	GM12878	blood:	n/a	n/a
25	FOXM1	chr7:116650189-116653251	GM12878	blood:	n/a	n/a
26	POLR2A	chr7:116649815-116652847	GM12878	blood:	n/a	n/a
27	PML	chr7:116649961-116652398	GM12878	blood:	n/a	n/a
28	POLR2A	chr7:116649759-116653016	GM12892	blood:	n/a	n/a
29	BATF	chr7:116650312-116652479	GM12878	blood:	n/a	n/a
30	CEBPB	chr7:116650326-116651305	GM12878	blood:	n/a	chr7:116650505-116650513
31	BCLAF1	chr7:116650823-116652481	GM12878	blood:	n/a	chr7:116652039-116652048
32	WRNIP1	chr7:116650888-116652147	GM12878	blood:	n/a	n/a
33	RELA	chr7:116650117-116652477	GM18951	blood:	n/a	chr7:116650710-116650719 chr7:116650710-116650719
34	POLR2A	chr7:116650779-116652239	GM12891	blood:	n/a	n/a
35	RELA	chr7:116649951-116652394	GM19099	blood:	n/a	chr7:116650710-116650719 chr7:116650710-116650719
36	STAT5A	chr7:116650308-116651471	GM12878	blood:	n/a	n/a
37	POLR2A	chr7:116650810-116652182	GM12891	blood:	n/a	n/a
38	RELA	chr7:116650045-116652928	GM12878	blood:	n/a	chr7:116650710-116650719 chr7:116650710-116650719
39	POLR2A	chr7:116649909-116653018	GM12891	blood:	n/a	n/a
40	ZNF143	chr7:116650572-116651464	GM12878	blood:	n/a	n/a
41	ATF2	chr7:116651239-116653173	GM12878	blood:	n/a	n/a
42	ATF2	chr7:116651069-116652631	GM12878	blood:	n/a	n/a
43	POLR2A	chr7:116650208-116652624	GM18505	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:116610596-116619447..7:116651084-116657331	H1-hESC	embryonic stem cell:	embryo
2	chr7:116589691..116599368-chr7:116647062..116658963,30	K562	blood:
3	chr7:116638342..116641684-chr7:116649141..116651622,3	K562	blood:
4	7:116651084-116657331..7:117341506-117356953	Hela-S3	cervix:
5	chr7:116591034..116595853-chr7:116650615..116657201,10	K562	blood:
6	chr7:116639159..116641684-chr7:116649141..116652754,4	K562	blood:

Variant related genes	Relation type
ST7	TF binding region
ENSG00000213050	Chromatin interaction
ENSG00000227199	Chromatin interaction
ENSG00000001626	Chromatin interaction
ENSG00000214188	Chromatin interaction
ENSG00000004866	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57349371	1.00[AMR][1000 genomes]
rs57800641	1.00[AMR][1000 genomes]
rs6973376	1.00[EUR][1000 genomes]
rs73470860	1.00[EUR][1000 genomes]
rs73714370	1.00[EUR][1000 genomes]
rs7805872	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527321	chr7:116635048-116660803	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116635600-116654800	Weak transcription	Psoas Muscle	Psoas
2	chr7:116635800-116660200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:116639800-116660000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116645600-116652800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr7:116645800-116654200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr7:116646000-116653400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr7:116646200-116652800	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr7:116646400-116653600	Enhancers	Primary T killer memory cells from peripheral blood	blood
9	chr7:116646400-116654000	Weak transcription	NHLF	lung
10	chr7:116646400-116654400	Weak transcription	NHDF-Ad	bronchial
11	chr7:116646600-116652200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr7:116646600-116653400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr7:116647000-116652600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr7:116647400-116652000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:116647400-116652200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:116647600-116652000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr7:116647600-116652400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:116647600-116653200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr7:116647800-116651600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr7:116648000-116654400	Weak transcription	Fetal Lung	lung
21	chr7:116648600-116652000	Enhancers	Osteobl	bone
22	chr7:116648600-116652200	Enhancers	Primary hematopoietic stem cells	blood
23	chr7:116649000-116652200	Enhancers	Colon Smooth Muscle	Colon
24	chr7:116649000-116652800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr7:116649000-116652800	Flanking Active TSS	GM12878-XiMat	blood
26	chr7:116649200-116652000	Enhancers	Primary B cells from peripheral blood	blood
27	chr7:116649400-116654400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:116649600-116654000	Enhancers	K562	blood
29	chr7:116649600-116654400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr7:116649800-116651400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr7:116649800-116651800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr7:116649800-116651800	Enhancers	Small Intestine	intestine
33	chr7:116649800-116652800	Enhancers	Primary T helper cells PMA-I stimulated	--
34	chr7:116650000-116652200	Enhancers	Duodenum Mucosa	Duodenum
35	chr7:116650200-116651800	Enhancers	Right Ventricle	heart
36	chr7:116650200-116652200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr7:116650200-116652600	Enhancers	Fetal Heart	heart
38	chr7:116650200-116654400	Weak transcription	Brain Anterior Caudate	brain
39	chr7:116650400-116652000	Weak transcription	Rectal Smooth Muscle	rectum
40	chr7:116650400-116652000	Enhancers	Right Atrium	heart
41	chr7:116650400-116652000	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr7:116650400-116652000	Weak transcription	A549	lung
43	chr7:116650600-116651400	Enhancers	Spleen	Spleen
44	chr7:116650600-116651600	Weak transcription	Primary B cells from cord blood	blood
45	chr7:116650600-116652000	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr7:116650600-116654400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr7:116650600-116654400	Weak transcription	NH-A	brain
48	chr7:116650600-116655400	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr7:116650800-116651400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
50	chr7:116650800-116651400	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links