Variant report

Variant	rs7805872
Chromosome Location	chr7:116499078-116499079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:115861595-115870968..7:116497593-116500954	GM12878	blood:
2	chr7:116492181..116495996-chr7:116498257..116500826,4	MCF-7	breast:
3	7:115890993-115892266..7:116497593-116500954	GM12878	blood:
4	chr7:116495375..116499387-chr7:116500931..116504999,6	K562	blood:
5	7:115847372-115857098..7:116497593-116500954	GM12878	blood:

Variant related genes	Relation type
ENSG00000198898	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57349371	1.00[AMR][1000 genomes]
rs57800641	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73714372	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831107	chr7:116414734-116649466	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116495600-116499200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:116495600-116502600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:116495800-116499200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr7:116495800-116499200	Weak transcription	Osteobl	bone
5	chr7:116495800-116502000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:116495800-116502000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:116496400-116502200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr7:116497200-116502000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr7:116497400-116502200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr7:116497800-116502000	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr7:116497800-116502000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr7:116497800-116502000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:116497800-116502200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:116497800-116502600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr7:116498400-116502200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr7:116499000-116499200	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr7:116499000-116500000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr7:116499000-116500600	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr7:116499000-116500800	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr7:116499000-116500800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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