Variant report

Variant	rs57359858
Chromosome Location	chr9:118356994-118356995
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73511218	0.83[AFR][1000 genomes]
rs73516407	0.83[AFR][1000 genomes]
rs73516410	0.83[AFR][1000 genomes]
rs73516421	0.87[AFR][1000 genomes]
rs73516437	0.83[AFR][1000 genomes]
rs73528138	0.87[AFR][1000 genomes]
rs73528139	0.87[AFR][1000 genomes]
rs73528142	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118351400-118357400	Enhancers	HMEC	breast
2	chr9:118351600-118358200	Enhancers	Osteobl	bone
3	chr9:118351800-118358200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:118351800-118358200	Enhancers	NHDF-Ad	bronchial
5	chr9:118352800-118358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118353800-118358800	Enhancers	A549	lung
7	chr9:118354000-118357200	Enhancers	NHLF	lung
8	chr9:118354000-118358200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:118354200-118357000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:118354200-118357600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:118354200-118358000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr9:118354200-118358200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr9:118354200-118358200	Enhancers	HSMM	muscle
14	chr9:118354400-118357200	Weak transcription	Adipose Nuclei	Adipose
15	chr9:118354400-118358000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:118354400-118358000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr9:118354400-118358000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr9:118354400-118358000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr9:118354400-118358000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:118354400-118358000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:118354400-118358200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr9:118354400-118358200	Weak transcription	Placenta	Placenta
23	chr9:118354400-118358400	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr9:118354400-118358600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr9:118354400-118359200	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr9:118354600-118358200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr9:118354600-118358400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr9:118355200-118358400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr9:118355400-118357400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr9:118355400-118357400	Enhancers	NHEK	skin
31	chr9:118355400-118358200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr9:118355400-118358200	Enhancers	NH-A	brain
33	chr9:118355800-118357000	Enhancers	Fetal Stomach	stomach
34	chr9:118355800-118358200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr9:118356200-118358200	Enhancers	HSMMtube	muscle
36	chr9:118356200-118358400	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:118356200-118361400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:118356600-118357200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr9:118356600-118358400	Enhancers	Hela-S3	cervix
40	chr9:118356800-118357000	Enhancers	Rectal Smooth Muscle	rectum
41	chr9:118356800-118357200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:118356800-118357200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links