Variant report

Variant	rs73528142
Chromosome Location	chr9:118354115-118354116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:118353398..118354353-chr9:119423269..119423966,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs57359858	0.87[AFR][1000 genomes]
rs66718915	0.85[AFR][1000 genomes]
rs7021225	0.83[AFR][1000 genomes]
rs73511206	0.85[AFR][1000 genomes]
rs73511207	0.88[AFR][1000 genomes]
rs73511218	0.96[AFR][1000 genomes]
rs73511287	0.85[AFR][1000 genomes]
rs73511289	0.85[AFR][1000 genomes]
rs73512278	0.92[AFR][1000 genomes]
rs73513326	0.83[AFR][1000 genomes]
rs73513350	0.83[AFR][1000 genomes]
rs73516407	0.96[AFR][1000 genomes]
rs73516410	0.96[AFR][1000 genomes]
rs73516421	1.00[AFR][1000 genomes]
rs73516432	0.85[AFR][1000 genomes]
rs73516436	0.92[AFR][1000 genomes]
rs73516437	0.96[AFR][1000 genomes]
rs73528138	1.00[AFR][1000 genomes]
rs73528139	1.00[AFR][1000 genomes]
rs73528140	0.88[AFR][1000 genomes]
rs73528144	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1046948	chr9:118185587-118926891	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv916622	chr9:118206309-118952390	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv540207	chr9:118206311-118920304	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv491661	chr9:118206312-118802177	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
7	nsv831698	chr9:118284259-118446456	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1047164	chr9:118286742-118456851	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118351400-118354800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr9:118351400-118357400	Enhancers	HMEC	breast
3	chr9:118351600-118358200	Enhancers	Osteobl	bone
4	chr9:118351800-118355000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:118351800-118358200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:118351800-118358200	Enhancers	NHDF-Ad	bronchial
7	chr9:118352000-118354800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr9:118352000-118355000	Enhancers	NH-A	brain
9	chr9:118352600-118354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr9:118352600-118356200	Weak transcription	Fetal Lung	lung
11	chr9:118352800-118358400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:118353000-118354200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr9:118353000-118354200	Weak transcription	HSMM	muscle
14	chr9:118353200-118354200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr9:118353400-118354200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr9:118353400-118354400	Enhancers	Placenta	Placenta
17	chr9:118353800-118354200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:118353800-118354200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:118353800-118354200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr9:118353800-118354400	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr9:118353800-118354400	Enhancers	Adipose Nuclei	Adipose
22	chr9:118353800-118358800	Enhancers	A549	lung
23	chr9:118354000-118354200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr9:118354000-118354200	Active TSS	HUES64 Cell Line	embryonic stem cell
25	chr9:118354000-118354200	Enhancers	Brain Inferior Temporal Lobe	brain
26	chr9:118354000-118354400	Enhancers	H1 Cell Line	embryonic stem cell
27	chr9:118354000-118354400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:118354000-118354400	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr9:118354000-118354400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
30	chr9:118354000-118354400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr9:118354000-118354400	Enhancers	Fetal Kidney	kidney
32	chr9:118354000-118354400	Enhancers	Fetal Stomach	stomach
33	chr9:118354000-118354400	Enhancers	Pancreas	Pancrea
34	chr9:118354000-118354400	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr9:118354000-118354400	Enhancers	Stomach Smooth Muscle	stomach
36	chr9:118354000-118354400	Enhancers	Dnd41	blood
37	chr9:118354000-118354400	Flanking Active TSS	Hela-S3	cervix
38	chr9:118354000-118354400	Enhancers	HSMMtube	muscle
39	chr9:118354000-118354600	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr9:118354000-118354600	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr9:118354000-118354600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
42	chr9:118354000-118354800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr9:118354000-118355000	Enhancers	NHEK	skin
44	chr9:118354000-118357200	Enhancers	NHLF	lung
45	chr9:118354000-118358200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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