Variant report

Variant	rs57368724
Chromosome Location	chr8:107116494-107116495
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12674526	0.89[ASN][1000 genomes]
rs12678627	0.89[ASN][1000 genomes]
rs12681930	0.89[ASN][1000 genomes]
rs12681941	0.89[ASN][1000 genomes]
rs1835265	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59539534	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60786650	0.89[ASN][1000 genomes]
rs6469039	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6469040	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73297483	0.89[ASN][1000 genomes]
rs73297486	0.89[ASN][1000 genomes]
rs7813365	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021369	chr8:106493317-107243322	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv611840	chr8:106913294-107265915	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv891262	chr8:107076421-107209378	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107115000-107117600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr8:107115200-107116600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr8:107115400-107117400	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr8:107115600-107116600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:107115600-107117400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:107116000-107116600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr8:107116200-107116800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:107116400-107117200	Enhancers	NHLF	lung
9	chr8:107116400-107117400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr8:107116400-107117400	Enhancers	A549	lung
11	chr8:107116400-107117400	Enhancers	Osteobl	bone
12	chr8:107116400-107118400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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