Variant report

Variant	rs57376891
Chromosome Location	chr1:150903200-150903201
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:150897904..150900695-chr1:150901454..150905304,5	K562	blood:
2	chr1:150902864..150904441-chr1:150906558..150909228,2	K562	blood:

Variant related genes	Relation type
ENSG00000143379	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10157132	1.00[AMR][1000 genomes]
rs12090632	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097548	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832391	1.00[AMR][1000 genomes]
rs55884154	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56341880	0.89[AMR][1000 genomes]
rs57378704	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57734108	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57746902	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58338969	1.00[AMR][1000 genomes]
rs59687612	0.87[AMR][1000 genomes]
rs59703669	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60676022	0.87[AMR][1000 genomes]
rs6672625	1.00[AMR][1000 genomes]
rs6674452	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6703303	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127060	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127063	1.00[AMR][1000 genomes]
rs74127089	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127091	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127092	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128604	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128609	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522741	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7547614	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:140 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150899400-150915000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:150899600-150913200	Weak transcription	Aorta	Aorta
3	chr1:150899600-150913200	Weak transcription	Right Ventricle	heart
4	chr1:150899600-150913600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:150899600-150943400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:150900000-150903200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
7	chr1:150900000-150903200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:150900000-150903200	Strong transcription	Fetal Intestine Small	intestine
9	chr1:150900000-150903400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr1:150900000-150904200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr1:150900000-150905400	Strong transcription	NHDF-Ad	bronchial
12	chr1:150900000-150905600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:150900000-150905600	Strong transcription	Osteobl	bone
14	chr1:150900000-150905800	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:150900000-150906200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr1:150900000-150913400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr1:150900000-150915200	Weak transcription	Esophagus	oesophagus
18	chr1:150900200-150903200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:150900200-150903200	Strong transcription	Fetal Stomach	stomach
20	chr1:150900200-150903200	Strong transcription	Fetal Thymus	thymus
21	chr1:150900200-150903400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:150900200-150903400	Strong transcription	Fetal Intestine Large	intestine
23	chr1:150900200-150903400	Strong transcription	Fetal Lung	lung
24	chr1:150900200-150903400	Strong transcription	Ovary	ovary
25	chr1:150900200-150903400	Strong transcription	Thymus	Thymus
26	chr1:150900200-150903600	Strong transcription	Colonic Mucosa	Colon
27	chr1:150900200-150904200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr1:150900200-150904200	Strong transcription	Duodenum Mucosa	Duodenum
29	chr1:150900200-150904200	Strong transcription	Fetal Muscle Trunk	muscle
30	chr1:150900200-150904200	Strong transcription	A549	lung
31	chr1:150900200-150904600	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr1:150900200-150905200	Strong transcription	Brain Inferior Temporal Lobe	brain
33	chr1:150900200-150905600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr1:150900200-150905800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr1:150900200-150905800	Strong transcription	Muscle Satellite Cultured Cells	--
36	chr1:150900200-150906000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr1:150900200-150906000	Strong transcription	Fetal Kidney	kidney
38	chr1:150900200-150906000	Strong transcription	Skeletal Muscle Male	skeletal muscle
39	chr1:150900200-150906200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr1:150900200-150906200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr1:150900200-150906600	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr1:150900200-150908400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr1:150900200-150909000	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr1:150900200-150941800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr1:150900400-150903200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr1:150900400-150903200	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr1:150900400-150903200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr1:150900400-150903600	Strong transcription	H9 Cell Line	embryonic stem cell
49	chr1:150900400-150903600	Strong transcription	HMEC	breast
50	chr1:150900400-150903600	Strong transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links