Variant report

Variant	rs6703303
Chromosome Location	chr1:150869840-150869841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150865101..150868127-chr1:150868317..150870783,3	K562	blood:
2	chr1:150859611..150863685-chr1:150866729..150869931,3	K562	blood:
3	chr1:150848907..150850900-chr1:150866879..150869881,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143437	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10157132	1.00[AMR][1000 genomes]
rs12090632	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097548	1.00[AMR][1000 genomes]
rs16832391	1.00[AMR][1000 genomes]
rs55884154	1.00[AMR][1000 genomes]
rs56341880	0.89[AMR][1000 genomes]
rs57376891	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378704	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57734108	0.89[AMR][1000 genomes]
rs57746902	1.00[AMR][1000 genomes]
rs58338969	1.00[AMR][1000 genomes]
rs59687612	0.87[AMR][1000 genomes]
rs59703669	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60676022	0.87[AMR][1000 genomes]
rs6672625	1.00[AMR][1000 genomes]
rs6674452	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127060	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127063	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127089	1.00[AMR][1000 genomes]
rs74127091	1.00[AMR][1000 genomes]
rs74127092	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128604	1.00[AMR][1000 genomes]
rs74128609	1.00[AMR][1000 genomes]
rs7522741	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7547614	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988459	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988521	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv2810	chr1:150835173-150879869	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150868600-150874000	Weak transcription	Placenta	Placenta
2	chr1:150869000-150870000	Enhancers	Skeletal Muscle Female	skeletal muscle

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