Variant report

Variant	rs6674452
Chromosome Location	chr1:150893096-150893097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:150888096..150891022-chr1:150892225..150894393,2	K562	blood:
2	chr1:150890944..150896725-chr1:150896868..150900962,8	MCF-7	breast:
3	chr1:150892976..150894840-chr1:150949265..150951717,2	K562	blood:

Variant related genes	Relation type
ENSG00000143379	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10157132	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12090632	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12097548	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16832391	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55884154	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56341880	0.89[AMR][1000 genomes]
rs57376891	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57378704	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57734108	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs57746902	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58338969	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59687612	0.87[AMR][1000 genomes]
rs59703669	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60676022	0.87[AMR][1000 genomes]
rs6672625	1.00[AMR][1000 genomes]
rs6703303	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127060	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127063	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127089	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127091	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127092	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128604	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74128609	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7522741	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7547614	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988459	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9988521	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2829859	chr1:150608894-150937329	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1001897	chr1:150743271-151241600	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
3	nsv535158	chr1:150743271-151241600	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
4	nsv1008496	chr1:150845827-150970656	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	62 gene(s)	inside rSNPs	diseases
5	nsv947130	chr1:150878115-150899504	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:150879200-150898200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:150888000-150894800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:150891200-150894800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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