Variant report

Variant	rs57389993
Chromosome Location	chr5:103367099-103367100
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs17156182	1.00[AMR][1000 genomes]
rs55809362	1.00[AMR][1000 genomes]
rs55842250	1.00[AMR][1000 genomes]
rs56007768	1.00[AMR][1000 genomes]
rs56304324	1.00[AMR][1000 genomes]
rs57146772	1.00[AMR][1000 genomes]
rs57792971	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58162690	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59240883	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60830179	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61009930	1.00[AMR][1000 genomes]
rs73775513	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775515	1.00[AMR][1000 genomes]
rs73775516	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775521	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73775530	1.00[AMR][1000 genomes]
rs73775532	1.00[AMR][1000 genomes]
rs73775550	1.00[AMR][1000 genomes]
rs73775552	1.00[AMR][1000 genomes]
rs73777645	1.00[AMR][1000 genomes]
rs73777647	1.00[AMR][1000 genomes]
rs73777649	1.00[AMR][1000 genomes]
rs73777656	1.00[AMR][1000 genomes]
rs73777658	1.00[AMR][1000 genomes]
rs73777659	1.00[AMR][1000 genomes]
rs73777660	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025859	chr5:102744479-103710290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv537833	chr5:102744479-103710290	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv882525	chr5:103279166-103375179	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027818	chr5:103318123-103445127	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103366400-103368200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:103367000-103368200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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