Variant report

Variant	rs73777656
Chromosome Location	chr5:103339828-103339829
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs17156182	1.00[AMR][1000 genomes]
rs55809362	1.00[AMR][1000 genomes]
rs55842250	1.00[AMR][1000 genomes]
rs56007768	1.00[AMR][1000 genomes]
rs56304324	1.00[AMR][1000 genomes]
rs57146772	1.00[AMR][1000 genomes]
rs57389993	1.00[AMR][1000 genomes]
rs57792971	1.00[AMR][1000 genomes]
rs58162690	1.00[AMR][1000 genomes]
rs59240883	1.00[AMR][1000 genomes]
rs60830179	1.00[AMR][1000 genomes]
rs61009930	1.00[AMR][1000 genomes]
rs73775513	1.00[AMR][1000 genomes]
rs73775515	1.00[AMR][1000 genomes]
rs73775516	1.00[AMR][1000 genomes]
rs73775521	1.00[AMR][1000 genomes]
rs73775530	1.00[AMR][1000 genomes]
rs73775532	1.00[AMR][1000 genomes]
rs73775550	1.00[AMR][1000 genomes]
rs73777629	0.86[AFR][1000 genomes]
rs73777632	0.86[AFR][1000 genomes]
rs73777645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777647	1.00[AMR][1000 genomes]
rs73777649	1.00[AMR][1000 genomes]
rs73777658	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777659	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73777660	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882523	chr5:102687151-103342745	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1025859	chr5:102744479-103710290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv537833	chr5:102744479-103710290	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv882524	chr5:103237745-104019292	Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv882525	chr5:103279166-103375179	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1027818	chr5:103318123-103445127	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:103339400-103340600	Enhancers	Fetal Lung	lung
2	chr5:103339800-103340600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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