Variant report
| Variant | rs57409700 |
|---|---|
| Chromosome Location | chr7:52851503-52851504 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10271224 | 0.84[EUR][1000 genomes] |
| rs10271633 | 0.84[EUR][1000 genomes] |
| rs17682594 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2330231 | 0.84[EUR][1000 genomes] |
| rs57587635 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs59383987 | 0.93[EUR][1000 genomes] |
| rs60600417 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs61574775 | 0.93[EUR][1000 genomes] |
| rs73351356 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73351358 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73355904 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73355905 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73355906 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73355908 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73355913 | 0.93[EUR][1000 genomes] |
| rs73355929 | 0.83[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73355931 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73357989 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73357992 | 0.89[AFR][1000 genomes];0.97[EUR][1000 genomes] |
| rs73357998 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73358002 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73359903 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73359912 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73359914 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73359925 | 0.94[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73359929 | 1.00[AFR][1000 genomes];0.93[EUR][1000 genomes] |
| rs987862 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv888026 | chr7:52588348-53013671 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv888027 | chr7:52588348-53190508 | Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv888029 | chr7:52797324-52881559 | Enhancers Weak transcription Active TSS Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv888030 | chr7:52797324-52894247 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv888031 | chr7:52797324-52944424 | ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv888032 | chr7:52826003-52905932 | Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 7 | nsv538843 | chr7:52843839-52861332 | Weak transcription Enhancers Active TSS Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:52849800-52857200 | Weak transcription | Colon Smooth Muscle | Colon |
| 2 | chr7:52851400-52851600 | Enhancers | Rectal Smooth Muscle | rectum |
