Variant report

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10263001	0.81[AFR][1000 genomes]
rs10271224	0.84[EUR][1000 genomes]
rs10271633	0.84[EUR][1000 genomes]
rs17682594	0.93[EUR][1000 genomes]
rs2330231	0.84[EUR][1000 genomes]
rs57409700	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57587635	0.93[EUR][1000 genomes]
rs59383987	0.94[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs60600417	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61574775	0.93[EUR][1000 genomes]
rs73351356	0.93[EUR][1000 genomes]
rs73351358	0.93[EUR][1000 genomes]
rs73355904	0.93[EUR][1000 genomes]
rs73355905	0.93[EUR][1000 genomes]
rs73355906	0.93[EUR][1000 genomes]
rs73355908	0.93[EUR][1000 genomes]
rs73355913	0.93[EUR][1000 genomes]
rs73355929	0.93[EUR][1000 genomes]
rs73355931	0.93[EUR][1000 genomes]
rs73357989	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73357992	0.97[EUR][1000 genomes]
rs73357998	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359903	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359912	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359914	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73359925	0.90[EUR][1000 genomes]
rs73359929	0.93[EUR][1000 genomes]
rs987862	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888029	chr7:52797324-52881559	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv888030	chr7:52797324-52894247	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv888031	chr7:52797324-52944424	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv888032	chr7:52826003-52905932	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv538843	chr7:52843839-52861332	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:52847400-52849400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr7:52849200-52849400	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr7:52849200-52849800	Enhancers	Colon Smooth Muscle	Colon
4	chr7:52849200-52851000	Enhancers	Rectal Smooth Muscle	rectum

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