Variant report

Variant	rs57471183
Chromosome Location	chr6:30082961-30082962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17180058	0.81[AMR][1000 genomes]
rs17180311	0.81[AMR][1000 genomes]
rs55973635	1.00[AMR][1000 genomes]
rs56082284	0.90[AMR][1000 genomes]
rs56214003	1.00[AMR][1000 genomes]
rs56402621	1.00[AMR][1000 genomes]
rs58031868	0.81[AMR][1000 genomes]
rs60968521	1.00[AMR][1000 genomes]
rs61748990	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73728115	1.00[AMR][1000 genomes]
rs7770569	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv884055	chr6:30078275-30087776	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:30082000-30089400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr6:30082200-30083400	Weak transcription	GM12878-XiMat	blood
3	chr6:30082200-30086400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:30082200-30087400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr6:30082400-30087200	Weak transcription	Hela-S3	cervix
6	chr6:30082400-30091000	Weak transcription	HepG2	liver
7	chr6:30082600-30086400	Weak transcription	Stomach Mucosa	stomach
8	chr6:30082600-30086400	Weak transcription	A549	lung
9	chr6:30082800-30086200	Weak transcription	Fetal Intestine Large	intestine
10	chr6:30082800-30086200	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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