Variant report

Variant	rs5751673
Chromosome Location	chr22:23800858-23800859
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr22:23800847-23800923	MCF-7	breast:	n/a	n/a
2	JUND	chr22:23800643-23800952	HepG2	liver:	n/a	n/a
3	MYC	chr22:23800780-23800908	MCF-7	breast:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
4	HEY1	chr22:23800517-23801037	HepG2	liver:	n/a	chr22:23800944-23800959
5	SP1	chr22:23800471-23800998	HepG2	liver:	n/a	chr22:23800854-23800863 chr22:23800853-23800865 chr22:23800850-23800864 chr22:23800853-23800865 chr22:23800855-23800864
6	MYC	chr22:23800735-23800930	MCF-7	breast:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
7	FOSL2	chr22:23800583-23800960	HepG2	liver:	n/a	n/a
8	POLR2A	chr22:23800855-23800865	MCF-7	breast:	n/a	n/a
9	MYC	chr22:23800729-23800923	HepG2	liver:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
10	USF1	chr22:23800658-23800942	HepG2	liver:	n/a	n/a
11	POLR2A	chr22:23800742-23800958	MCF-7	breast:	n/a	n/a
12	MAX	chr22:23800711-23801096	HepG2	liver:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
13	USF1	chr22:23800739-23800931	HepG2	liver:	n/a	n/a
14	MYC	chr22:23800690-23800950	MCF-7	breast:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
15	CTCF	chr22:23800851-23800877	H1-hESC	embryonic stem cell:	n/a	n/a
16	MAX	chr22:23800716-23801054	HepG2	liver:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
17	BHLHE40	chr22:23800642-23800955	HepG2	liver:	n/a	n/a
18	MYC	chr22:23800684-23800950	MCF-7	breast:	n/a	chr22:23800823-23800839 chr22:23800832-23800841 chr22:23800831-23800842 chr22:23800831-23800842 chr22:23800832-23800842
19	RXRA	chr22:23800505-23800996	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000227755	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2073384	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3827370	0.85[EUR][1000 genomes]
rs5759824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5759825	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057659	chr22:23400739-24138788	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv9876	chr22:23563331-23923059	Strong transcription Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv531550	chr22:23589667-24012550	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv2762117	chr22:23592136-23996869	Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv1063476	chr22:23596683-23989388	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
6	nsv544617	chr22:23596683-23989388	Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
7	nsv1059951	chr22:23597270-23973060	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	nsv1060339	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv544618	chr22:23603429-23984195	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
10	nsv1059384	chr22:23614429-23984195	Bivalent Enhancer Genic enhancers Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
11	nsv544619	chr22:23614429-23984195	Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
12	nsv588601	chr22:23632665-23979219	Bivalent Enhancer Active TSS Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
13	nsv914579	chr22:23650987-23995056	Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
14	nsv914581	chr22:23720420-23995056	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
15	nsv469702	chr22:23743640-23890756	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
16	nsv482382	chr22:23743640-23890756	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
17	nsv933040	chr22:23747565-23922420	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	nsv933753	chr22:23747905-23933431	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
19	nsv834154	chr22:23748703-23902492	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
20	nsv1062411	chr22:23750101-24264796	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	90 gene(s)	inside rSNPs	diseases
21	nsv870195	chr22:23763905-23853815	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
22	nsv528171	chr22:23781075-23852494	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
23	nsv914585	chr22:23793801-23849044	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:23792800-23812800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr22:23798000-23804600	Enhancers	Primary hematopoietic stem cells	blood
3	chr22:23798200-23804800	Enhancers	Fetal Thymus	thymus
4	chr22:23798800-23802600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr22:23798800-23803400	Flanking Active TSS	Dnd41	blood
6	chr22:23799000-23801600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr22:23799000-23803000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr22:23799000-23803000	Enhancers	Placenta	Placenta
9	chr22:23799200-23801600	Enhancers	Ovary	ovary
10	chr22:23799800-23801200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr22:23799800-23804200	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr22:23800000-23801400	Weak transcription	Thymus	Thymus
13	chr22:23800000-23802600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr22:23800000-23802800	Enhancers	HepG2	liver
15	chr22:23800200-23801400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr22:23800200-23802600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr22:23800200-23802800	Enhancers	Fetal Muscle Leg	muscle
18	chr22:23800200-23803200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr22:23800200-23803400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr22:23800400-23801000	Enhancers	HMEC	breast
21	chr22:23800400-23815200	Weak transcription	Primary B cells from cord blood	blood
22	chr22:23800800-23801400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr22:23800800-23801600	Enhancers	Esophagus	oesophagus
24	chr22:23800800-23801800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links