Variant report

Variant rs5752939
Chromosome Location chr22:20790087-20790088
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:20784200-20796200 Weak transcription Dnd41 blood
2 chr22:20785200-20790200 Weak transcription Aorta Aorta
3 chr22:20786200-20790800 Weak transcription Gastric stomach
4 chr22:20786400-20790800 Weak transcription Pancreas Pancrea
5 chr22:20787800-20790400 Bivalent Enhancer Placenta Placenta
6 chr22:20788400-20790200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr22:20788800-20790200 Bivalent Enhancer Fetal Muscle Leg muscle
8 chr22:20789000-20790200 Enhancers Lung lung
9 chr22:20789200-20790200 Genic enhancers Right Atrium heart
10 chr22:20789200-20790800 Flanking Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
11 chr22:20789400-20790200 Bivalent Enhancer iPS DF 19.11 Cell Line embryonic stem cell
12 chr22:20789400-20790400 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr22:20789400-20790400 Enhancers Cortex derived primary cultured neurospheres brain
14 chr22:20789400-20790600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
15 chr22:20789600-20790200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr22:20789600-20790200 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
17 chr22:20789600-20790400 Enhancers Right Ventricle heart
18 chr22:20789600-20792000 Flanking Active TSS Stomach Smooth Muscle stomach
19 chr22:20789800-20790200 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
20 chr22:20789800-20790200 Bivalent Enhancer Ganglion Eminence derived primary cultured neurospheres brain
21 chr22:20789800-20790200 Bivalent Enhancer Adipose Nuclei Adipose
22 chr22:20789800-20790200 Bivalent Enhancer Skeletal Muscle Female skeletal muscle
23 chr22:20789800-20790400 Transcr. at gene 5' and 3' H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr22:20789800-20790400 Transcr. at gene 5' and 3' IMR90 fetal lung fibroblasts Cell Line lung
25 chr22:20789800-20790400 Bivalent Enhancer ES-UCSF4 Cell Line embryonic stem cell
26 chr22:20789800-20790400 Bivalent Enhancer Primary T helper cells fromperipheralblood blood
27 chr22:20789800-20790400 Transcr. at gene 5' and 3' Fetal Stomach stomach
28 chr22:20789800-20790400 Enhancers Left Ventricle heart
29 chr22:20789800-20790400 Transcr. at gene 5' and 3' NHLF lung
30 chr22:20789800-20790600 Flanking Active TSS H9 Derived Neuron Cultured Cells ES cell derived
31 chr22:20789800-20790600 Flanking Active TSS Muscle Satellite Cultured Cells --
32 chr22:20789800-20790600 Flanking Active TSS Ovary ovary
33 chr22:20789800-20790600 Flanking Active TSS NHDF-Ad bronchial
34 chr22:20789800-20791000 Enhancers Brain Angular Gyrus brain
35 chr22:20790000-20790200 Bivalent Enhancer ES-I3 Cell Line embryonic stem cell
36 chr22:20790000-20790200 Genic enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
37 chr22:20790000-20790200 Bivalent Enhancer H9 Cell Line embryonic stem cell
38 chr22:20790000-20790200 Bivalent/Poised TSS Primary T helper naive cells from peripheral blood blood
39 chr22:20790000-20790200 Bivalent/Poised TSS Fetal Brain Male brain
40 chr22:20790000-20790200 Enhancers Fetal Heart heart
41 chr22:20790000-20790200 Bivalent Enhancer Fetal Intestine Large intestine
42 chr22:20790000-20790200 Flanking Active TSS Fetal Kidney kidney
43 chr22:20790000-20790200 Bivalent/Poised TSS Rectal Mucosa Donor 29 rectum
44 chr22:20790000-20790200 Flanking Bivalent TSS/Enh Rectal Mucosa Donor 31 rectum
45 chr22:20790000-20790200 Active TSS HSMM muscle
46 chr22:20790000-20790200 Enhancers HSMMtube muscle
47 chr22:20790000-20790200 Enhancers HUVEC blood vessel
48 chr22:20790000-20790400 Bivalent Enhancer H1 Cell Line embryonic stem cell
49 chr22:20790000-20790400 Bivalent Enhancer iPS DF 6.9 Cell Line embryonic stem cell
50 chr22:20790000-20790400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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