Variant report

Variant rs5762554
Chromosome Location chr22:20777941-20777942
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr22:20761800-20779200 Weak transcription Placenta Amnion Placenta Amnion
2 chr22:20762600-20779400 Weak transcription Lung lung
3 chr22:20773000-20779400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
4 chr22:20773000-20781200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
5 chr22:20773000-20783000 Weak transcription HUVEC blood vessel
6 chr22:20773200-20779000 Weak transcription Muscle Satellite Cultured Cells --
7 chr22:20773800-20779000 Weak transcription Fetal Heart heart
8 chr22:20776000-20779200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
9 chr22:20776200-20780200 Enhancers Fetal Brain Male brain
10 chr22:20776400-20778000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr22:20776400-20778000 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr22:20776400-20778000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
13 chr22:20776400-20778200 Enhancers Fetal Muscle Trunk muscle
14 chr22:20776400-20778200 Enhancers NH-A brain
15 chr22:20776400-20778200 Enhancers Osteobl bone
16 chr22:20776400-20778400 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
17 chr22:20776400-20778600 Enhancers Primary T cells from cord blood blood
18 chr22:20776400-20778800 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
19 chr22:20776400-20778800 Enhancers Primary hematopoietic stem cells blood
20 chr22:20776400-20778800 Enhancers Fetal Lung lung
21 chr22:20776400-20779000 Enhancers Colon Smooth Muscle Colon
22 chr22:20776400-20779200 Enhancers Primary hematopoietic stem cells short term culture blood
23 chr22:20776400-20779200 Enhancers NHDF-Ad bronchial
24 chr22:20776400-20779600 Bivalent Enhancer Fetal Stomach stomach
25 chr22:20776600-20778200 Enhancers HSMM muscle
26 chr22:20776600-20778400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
27 chr22:20776600-20778400 Enhancers Ovary ovary
28 chr22:20776600-20778600 Enhancers Skeletal Muscle Female skeletal muscle
29 chr22:20776600-20778600 Enhancers HSMMtube muscle
30 chr22:20776600-20779000 Enhancers Breast Myoepithelial Primary Cells Breast
31 chr22:20776600-20779200 Enhancers Brain Angular Gyrus brain
32 chr22:20776600-20779200 Enhancers Rectal Smooth Muscle rectum
33 chr22:20776600-20779200 Enhancers Skeletal Muscle Male skeletal muscle
34 chr22:20776600-20779200 Enhancers Stomach Smooth Muscle stomach
35 chr22:20776600-20779400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
36 chr22:20776600-20779400 Enhancers Brain Hippocampus Middle brain
37 chr22:20776800-20778000 Enhancers Brain Anterior Caudate brain
38 chr22:20776800-20778000 Enhancers Brain Cingulate Gyrus brain
39 chr22:20776800-20778200 Enhancers Duodenum Smooth Muscle Duodenum
40 chr22:20776800-20778600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
41 chr22:20776800-20778800 Enhancers Cortex derived primary cultured neurospheres brain
42 chr22:20776800-20780600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr22:20777000-20778200 Enhancers Aorta Aorta
44 chr22:20777000-20779000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
45 chr22:20777000-20779200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
46 chr22:20777200-20778400 Enhancers Right Ventricle heart
47 chr22:20777200-20779000 Enhancers Liver Liver
48 chr22:20777200-20779000 Enhancers Brain Substantia Nigra brain
49 chr22:20777200-20779000 Enhancers Placenta Placenta
50 chr22:20777200-20779200 Genic enhancers NHLF lung

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