Variant report

Variant	rs5753416
Chromosome Location	chr22:31392714-31392715
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs2285920	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2286214	1.00[YRI][hapmap]
rs4820922	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs56683450	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5749190	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5749196	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5749205	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5753371	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5753375	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5753380	1.00[CEU][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5753391	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5753409	1.00[CEU][hapmap];0.90[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5753425	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62236060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238089	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62238091	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62238093	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62238094	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62238096	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv9896	chr22:31369204-31513933	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31390600-31394200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr22:31391600-31394200	Weak transcription	K562	blood
3	chr22:31392200-31393400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links