Variant report

Variant	rs575510
Chromosome Location	chr10:89961657-89961658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs473875	0.82[ASN][1000 genomes]
rs490265	0.81[ASN][1000 genomes]
rs543338	0.90[MEX][hapmap]
rs577880	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs575510	LRIT2	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:89955400-89962400	Weak transcription	Left Ventricle	heart
3	chr10:89955400-89963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:89955400-89965000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
6	chr10:89959600-89961800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:89960800-89965600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr10:89961400-89964400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr10:89961600-89964600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links