Variant report

Variant	rs577880
Chromosome Location	chr10:89966471-89966472
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs473875	0.80[AMR][1000 genomes]
rs481840	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs490265	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs501751	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs505384	0.84[EUR][1000 genomes]
rs510727	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs536243	0.81[ASN][1000 genomes]
rs538292	0.84[EUR][1000 genomes]
rs539299	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs640906	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs642864	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9804295	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89964400-89969000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr10:89965200-89967800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:89965600-89966600	Enhancers	Fetal Lung	lung
5	chr10:89965800-89966600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:89965800-89967200	Enhancers	Fetal Kidney	kidney
7	chr10:89966000-89967600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:89966000-89969000	Weak transcription	Psoas Muscle	Psoas
9	chr10:89966000-89969000	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr10:89966200-89967200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:89966200-89968600	Weak transcription	HMEC	breast
12	chr10:89966200-89969600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr10:89966200-89970200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:89966400-89969200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:89966400-89973000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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