Variant report

Variant	rs9804295
Chromosome Location	chr10:89976555-89976556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs481840	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs490265	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs501751	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs510727	0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs536243	0.81[ASN][1000 genomes]
rs539299	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs577880	0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs640906	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs642864	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
2	chr10:89967800-89978200	Weak transcription	Pancreas	Pancrea
3	chr10:89969200-89979400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr10:89970600-89978000	Weak transcription	Right Atrium	heart
5	chr10:89970800-89980600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr10:89971200-89978200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:89974200-89979200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr10:89974800-89979000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:89976400-89976800	Enhancers	Fetal Intestine Large	intestine
10	chr10:89976400-89976800	Enhancers	GM12878-XiMat	blood
11	chr10:89976400-89977400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:89976400-89977400	Enhancers	Primary B cells from peripheral blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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