Variant report

Variant	rs490265
Chromosome Location	chr10:89961530-89961531
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs473875	0.80[AMR][1000 genomes]
rs481840	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs501751	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs505384	0.87[EUR][1000 genomes]
rs510727	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs536243	0.88[ASN][1000 genomes]
rs538292	0.87[EUR][1000 genomes]
rs539299	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs575510	0.81[ASN][1000 genomes]
rs577880	1.00[CEU][hapmap];0.87[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];0.84[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs640906	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs642864	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9804295	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831940	chr10:89811247-89989199	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv895878	chr10:89959082-90006507	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89951000-89965600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr10:89955400-89962400	Weak transcription	Left Ventricle	heart
3	chr10:89955400-89963800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr10:89955400-89965000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr10:89955400-89998000	Weak transcription	Aorta	Aorta
6	chr10:89959200-89961600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:89959600-89961800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr10:89960800-89961600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:89960800-89965600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr10:89961400-89964400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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