Variant report

Variant	rs57557483
Chromosome Location	chr8:130677813-130677814
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1077235	0.85[EUR][1000 genomes]
rs62523762	0.85[EUR][1000 genomes]
rs62523764	0.85[EUR][1000 genomes]
rs62523765	0.85[EUR][1000 genomes]
rs62523766	0.85[EUR][1000 genomes]
rs62523775	0.91[EUR][1000 genomes]
rs62523777	0.87[EUR][1000 genomes]
rs62523778	0.87[EUR][1000 genomes]
rs62523814	0.81[EUR][1000 genomes]
rs62523815	0.91[EUR][1000 genomes]
rs62523818	0.97[EUR][1000 genomes]
rs62523819	0.87[EUR][1000 genomes]
rs62523821	0.94[EUR][1000 genomes]
rs62523824	0.97[EUR][1000 genomes]
rs62523825	0.97[EUR][1000 genomes]
rs62525621	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130675600-130678000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr8:130675800-130680400	Enhancers	Primary hematopoietic stem cells	blood
3	chr8:130676400-130680000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr8:130676600-130678000	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr8:130676800-130678200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr8:130676800-130680200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr8:130677800-130678200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:130677800-130678400	Enhancers	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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