Variant report

Variant	rs62523819
Chromosome Location	chr8:130678934-130678935
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1077235	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs57557483	0.87[EUR][1000 genomes]
rs62523762	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62523764	0.84[EUR][1000 genomes]
rs62523765	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs62523766	0.84[EUR][1000 genomes]
rs62523775	0.84[EUR][1000 genomes]
rs62523777	0.87[EUR][1000 genomes]
rs62523778	0.87[EUR][1000 genomes]
rs62523814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs62523815	0.84[EUR][1000 genomes]
rs62523816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62523818	0.90[EUR][1000 genomes]
rs62523821	0.93[EUR][1000 genomes]
rs62523824	0.90[EUR][1000 genomes]
rs62523825	0.90[EUR][1000 genomes]
rs62525621	1.00[AFR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130675800-130680400	Enhancers	Primary hematopoietic stem cells	blood
2	chr8:130676400-130680000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr8:130676800-130680200	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr8:130678000-130679000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:130678000-130679400	Enhancers	Primary B cells from cord blood	blood
6	chr8:130678000-130679600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr8:130678200-130679000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
8	chr8:130678200-130679200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links