Variant report

Variant	rs62523824
Chromosome Location	chr8:130687963-130687964
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1077235	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57557483	0.97[EUR][1000 genomes]
rs62523762	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62523764	0.87[EUR][1000 genomes]
rs62523765	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62523766	0.87[EUR][1000 genomes]
rs62523775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62523777	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62523778	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62523814	0.84[EUR][1000 genomes]
rs62523815	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62523816	0.81[EUR][1000 genomes]
rs62523818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62523819	0.90[EUR][1000 genomes]
rs62523821	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62523825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62525621	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891446	chr8:130656205-130710638	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:130682600-130694000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr8:130685400-130688200	Enhancers	K562	blood
3	chr8:130686000-130688200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr8:130686000-130688200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr8:130686000-130689200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:130686000-130691200	Weak transcription	Fetal Lung	lung
7	chr8:130687600-130689400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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