Variant report

Variant	rs57562165
Chromosome Location	chr15:73283991-73283992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1900900	1.00[AMR][1000 genomes]
rs28450594	1.00[AMR][1000 genomes]
rs28638032	1.00[AMR][1000 genomes]
rs35979724	1.00[AMR][1000 genomes]
rs56112992	1.00[AMR][1000 genomes]
rs56955824	1.00[AMR][1000 genomes]
rs58530881	1.00[AMR][1000 genomes]
rs6495027	1.00[AMR][1000 genomes]
rs73434061	1.00[AMR][1000 genomes]
rs73435927	1.00[AMR][1000 genomes]
rs73435936	1.00[AMR][1000 genomes]
rs74021559	1.00[AMR][1000 genomes]
rs8024301	1.00[AMR][1000 genomes]
rs8037313	1.00[AMR][1000 genomes]
rs9944169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73278000-73286200	Weak transcription	Fetal Brain Male	brain
2	chr15:73282800-73284200	Enhancers	NHEK	skin
3	chr15:73282800-73284400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73282800-73285600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr15:73283200-73285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:73283400-73284000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr15:73283400-73284200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:73283400-73285800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:73283600-73286000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr15:73283800-73284000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:73283800-73285200	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr15:73283800-73285800	Enhancers	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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