Variant report

Variant	rs73435927
Chromosome Location	chr15:73287367-73287368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:73281450..73284379-chr15:73286906..73289508,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1868474	1.00[EUR][1000 genomes]
rs1900900	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28450594	1.00[AMR][1000 genomes]
rs28638032	1.00[AMR][1000 genomes]
rs34793011	1.00[EUR][1000 genomes]
rs35979724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56955824	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57562165	1.00[AMR][1000 genomes]
rs58530881	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495027	1.00[AMR][1000 genomes]
rs7166661	1.00[EUR][1000 genomes]
rs73434008	1.00[EUR][1000 genomes]
rs73434061	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73435936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73435954	1.00[EUR][1000 genomes]
rs74021559	1.00[AMR][1000 genomes]
rs8024301	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037313	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042368	1.00[EUR][1000 genomes]
rs895903	1.00[EUR][1000 genomes]
rs9944169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73284000-73289800	Enhancers	Fetal Lung	lung
2	chr15:73284000-73294800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:73284400-73290200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:73284600-73290400	Enhancers	Fetal Stomach	stomach
5	chr15:73284800-73288800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr15:73285000-73289200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:73285000-73292400	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:73286000-73288800	Enhancers	Stomach Mucosa	stomach
9	chr15:73286200-73287600	Enhancers	Fetal Intestine Small	intestine
10	chr15:73286200-73288400	Enhancers	Fetal Brain Male	brain
11	chr15:73286400-73287600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:73286600-73287800	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr15:73286800-73288000	Weak transcription	Brain Substantia Nigra	brain
14	chr15:73287000-73287400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:73287000-73287400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr15:73287000-73287400	Enhancers	Muscle Satellite Cultured Cells	--
17	chr15:73287000-73287400	Weak transcription	Colon Smooth Muscle	Colon
18	chr15:73287000-73287400	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr15:73287000-73287600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:73287200-73287400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:73287200-73287400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr15:73287200-73287400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr15:73287200-73287400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr15:73287200-73287400	Enhancers	Aorta	Aorta
25	chr15:73287200-73287400	Flanking Active TSS	Duodenum Mucosa	Duodenum
26	chr15:73287200-73287400	Enhancers	Fetal Muscle Trunk	muscle
27	chr15:73287200-73287600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:73287200-73287600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr15:73287200-73287600	Enhancers	Fetal Intestine Large	intestine
30	chr15:73287200-73287600	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr15:73287200-73287600	Active TSS	Stomach Smooth Muscle	stomach
32	chr15:73287200-73287600	Flanking Active TSS	NHEK	skin
33	chr15:73287200-73287600	Active TSS	Osteobl	bone
34	chr15:73287200-73287800	Enhancers	Brain Germinal Matrix	brain
35	chr15:73287200-73287800	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr15:73287200-73287800	Flanking Active TSS	Ovary	ovary
37	chr15:73287200-73287800	Active TSS	NHLF	lung
38	chr15:73287200-73288000	Enhancers	Fetal Brain Female	brain
39	chr15:73287200-73288200	Active TSS	Skeletal Muscle Female	skeletal muscle
40	chr15:73287200-73290000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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