Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1868474	1.00[EUR][1000 genomes]
rs28450594	1.00[AMR][1000 genomes]
rs28638032	1.00[AMR][1000 genomes]
rs34793011	1.00[EUR][1000 genomes]
rs35979724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56112992	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56955824	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57562165	1.00[AMR][1000 genomes]
rs58530881	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6495027	1.00[AMR][1000 genomes]
rs73434008	1.00[EUR][1000 genomes]
rs73434061	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73435927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73435936	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73435954	1.00[EUR][1000 genomes]
rs74021559	1.00[AMR][1000 genomes]
rs8024301	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037313	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042368	1.00[EUR][1000 genomes]
rs895903	1.00[EUR][1000 genomes]
rs9944169	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv521475	chr15:73250485-73263405	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73253400-73258200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
2	chr15:73253400-73261400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr15:73254600-73258000	Weak transcription	Fetal Brain Male	brain
4	chr15:73254800-73260000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:73254800-73263200	Weak transcription	Fetal Muscle Trunk	muscle
6	chr15:73255000-73259800	Weak transcription	Colonic Mucosa	Colon
7	chr15:73255200-73258000	Weak transcription	Fetal Intestine Large	intestine
8	chr15:73256800-73258200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr15:73256800-73260000	Weak transcription	Rectal Mucosa Donor 31	rectum

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