Variant report

Variant	rs73435954
Chromosome Location	chr15:73302063-73302064
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1868474	1.00[EUR][1000 genomes]
rs1900900	1.00[EUR][1000 genomes]
rs34793011	1.00[EUR][1000 genomes]
rs35979724	1.00[EUR][1000 genomes]
rs56112992	1.00[EUR][1000 genomes]
rs56955824	1.00[EUR][1000 genomes]
rs58530881	1.00[EUR][1000 genomes]
rs7166661	1.00[EUR][1000 genomes]
rs73434008	1.00[EUR][1000 genomes]
rs73434061	1.00[EUR][1000 genomes]
rs73435927	1.00[EUR][1000 genomes]
rs73435936	1.00[EUR][1000 genomes]
rs8024301	1.00[EUR][1000 genomes]
rs8037313	1.00[EUR][1000 genomes]
rs8042368	1.00[EUR][1000 genomes]
rs895903	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352103	chr15:73191535-73454001	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv482421	chr15:73279141-73426897	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73298400-73303200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr15:73299800-73302400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73301200-73303200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:73301400-73302200	Enhancers	Fetal Lung	lung
5	chr15:73301400-73303200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:73301400-73303400	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr15:73301400-73303600	Enhancers	Fetal Stomach	stomach
8	chr15:73301400-73303600	Enhancers	HMEC	breast
9	chr15:73301600-73302200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:73301600-73302200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:73301600-73303200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr15:73301600-73303200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr15:73301600-73303400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr15:73301800-73302200	Bivalent Enhancer	Fetal Muscle Leg	muscle
15	chr15:73301800-73302600	Flanking Active TSS	NHEK	skin
16	chr15:73301800-73302800	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr15:73301800-73303200	Enhancers	Aorta	Aorta
18	chr15:73301800-73310400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:73302000-73303000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr15:73302000-73303000	Weak transcription	Psoas Muscle	Psoas
21	chr15:73302000-73303000	Enhancers	Skeletal Muscle Male	skeletal muscle

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