Variant report

Variant	rs575632479
Chromosome Location	chr15:55878917-55878918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55875375..55879008-chr15:55880167..55883388,4	K562	blood:
2	chr15:55876611..55879059-chr15:55880096..55882468,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171016	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv1040917	chr15:55562940-55943942	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv531054	chr15:55571230-55914205	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
5	nsv948522	chr15:55639867-56032099	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv1041635	chr15:55658171-55943942	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv457157	chr15:55722213-56255774	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	nsv569539	chr15:55722213-56255774	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	nsv833016	chr15:55749169-55897906	Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv1049774	chr15:55759573-56044600	Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
11	nsv569540	chr15:55866065-55950082	Strong transcription Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	esv3373041	chr15:55878885-55882033	Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55858000-55879400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:55865600-55879000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr15:55876600-55879400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:55877400-55881600	Active TSS	Skeletal Muscle Female	skeletal muscle
5	chr15:55877600-55879000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:55877600-55879200	Active TSS	Fetal Brain Female	brain
7	chr15:55877800-55879400	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr15:55878000-55879800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr15:55878200-55879000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr15:55878200-55879000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
11	chr15:55878200-55879200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:55878200-55879400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr15:55878200-55879800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:55878200-55879800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr15:55878200-55879800	Flanking Active TSS	Fetal Brain Male	brain
16	chr15:55878400-55879200	Enhancers	Fetal Muscle Leg	muscle
17	chr15:55878400-55879400	Flanking Active TSS	Colon Smooth Muscle	Colon
18	chr15:55878400-55879800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:55878400-55880200	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
20	chr15:55878400-55881600	Active TSS	Stomach Smooth Muscle	stomach
21	chr15:55878400-55881800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr15:55878600-55879000	Enhancers	Fetal Stomach	stomach
23	chr15:55878600-55879400	Enhancers	Adipose Nuclei	Adipose
24	chr15:55878600-55879600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
25	chr15:55878800-55879000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:55878800-55879000	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr15:55878800-55879000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
28	chr15:55878800-55879000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
29	chr15:55878800-55879000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
30	chr15:55878800-55879000	Flanking Bivalent TSS/Enh	Brain Anterior Caudate	brain
31	chr15:55878800-55879000	Flanking Active TSS	Ovary	ovary
32	chr15:55878800-55879000	Enhancers	Placenta Amnion	Placenta Amnion
33	chr15:55878800-55879000	Flanking Active TSS	Psoas Muscle	Psoas
34	chr15:55878800-55879000	Flanking Active TSS	Rectal Smooth Muscle	rectum
35	chr15:55878800-55879000	Enhancers	HepG2	liver
36	chr15:55878800-55879000	Enhancers	HSMM	muscle
37	chr15:55878800-55879200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr15:55878800-55879200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr15:55878800-55879200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:55878800-55879200	Enhancers	Fetal Heart	heart
41	chr15:55878800-55879200	Flanking Active TSS	A549	lung
42	chr15:55878800-55879200	Active TSS	HSMMtube	muscle
43	chr15:55878800-55879200	Flanking Active TSS	NH-A	brain
44	chr15:55878800-55879200	Flanking Active TSS	NHDF-Ad	bronchial
45	chr15:55878800-55879200	Flanking Active TSS	NHLF	lung
46	chr15:55878800-55879400	Flanking Active TSS	Fetal Kidney	kidney
47	chr15:55878800-55879400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
48	chr15:55878800-55879400	Flanking Active TSS	Osteobl	bone
49	chr15:55878800-55879600	Flanking Active TSS	Fetal Lung	lung
50	chr15:55878800-55880000	Flanking Active TSS	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links