Variant report

Variant	rs57565136
Chromosome Location	chr4:150791833-150791834
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10018313	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10027531	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12331667	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17631473	0.88[EUR][1000 genomes]
rs17631491	0.88[EUR][1000 genomes]
rs17687953	0.88[EUR][1000 genomes]
rs2359925	0.94[EUR][1000 genomes]
rs28463011	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626905	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884831	0.94[EUR][1000 genomes]
rs56971064	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57311026	0.88[EUR][1000 genomes]
rs57883887	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58033334	0.88[EUR][1000 genomes]
rs59261065	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72963601	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72965303	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677694	0.97[ASN][1000 genomes]
rs7677816	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7678021	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9307861	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9884130	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv518267	chr4:150777012-150795554	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150790800-150792000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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