Variant report

Variant	rs10027531
Chromosome Location	chr4:150798241-150798242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10003672	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10018313	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10023439	1.00[AMR][1000 genomes]
rs10032726	0.80[AMR][1000 genomes]
rs10033959	1.00[AMR][1000 genomes]
rs12331422	1.00[AMR][1000 genomes]
rs12331667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17631473	0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs17631491	0.83[EUR][1000 genomes]
rs17687953	0.83[EUR][1000 genomes]
rs2359925	0.93[JPT][hapmap];0.89[EUR][1000 genomes]
rs28422949	1.00[AMR][1000 genomes]
rs28463011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28542198	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28582010	1.00[AMR][1000 genomes]
rs28626905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28636756	1.00[AMR][1000 genomes]
rs28710322	1.00[AMR][1000 genomes]
rs28785307	1.00[AMR][1000 genomes]
rs2884831	1.00[JPT][hapmap];0.89[EUR][1000 genomes]
rs56971064	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57311026	0.83[EUR][1000 genomes]
rs57565136	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57883887	0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58033334	0.83[EUR][1000 genomes]
rs58472290	0.80[AMR][1000 genomes]
rs59261065	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60610443	1.00[AMR][1000 genomes]
rs72963601	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72963602	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965303	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72965305	1.00[AMR][1000 genomes]
rs7677694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677816	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7678021	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307861	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9884130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9994620	0.80[AMR][1000 genomes]
rs9998191	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150794600-150799800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:150795200-150806200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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