Variant report

Variant	rs7677816
Chromosome Location	chr4:150798472-150798473
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10018313	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10027531	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12331667	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17631473	0.94[EUR][1000 genomes]
rs17631491	0.94[EUR][1000 genomes]
rs17687941	0.84[EUR][1000 genomes]
rs17687953	0.94[EUR][1000 genomes]
rs2359925	1.00[EUR][1000 genomes]
rs28463011	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28626905	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2884831	1.00[EUR][1000 genomes]
rs56971064	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57311026	0.94[EUR][1000 genomes]
rs57565136	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57883887	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58033334	0.94[EUR][1000 genomes]
rs59261065	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72961429	0.84[EUR][1000 genomes]
rs72963601	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72965303	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7677694	1.00[ASN][1000 genomes]
rs7678021	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9307861	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9884130	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150794600-150799800	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:150795200-150806200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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