Variant report

Variant	rs28542198
Chromosome Location	chr4:150791571-150791572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10003672	0.84[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018313	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10022635	1.00[EUR][1000 genomes]
rs10023439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027531	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032726	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10033959	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331422	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331667	1.00[AMR][1000 genomes]
rs12332005	1.00[EUR][1000 genomes]
rs28418894	1.00[EUR][1000 genomes]
rs28422949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28461665	1.00[EUR][1000 genomes]
rs28463011	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28505722	1.00[EUR][1000 genomes]
rs28582010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28626905	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28636756	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28710322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28711701	1.00[EUR][1000 genomes]
rs28785307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58472290	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60610443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72728512	1.00[EUR][1000 genomes]
rs72963601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965303	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965316	1.00[EUR][1000 genomes]
rs7677694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9307861	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9884130	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9994620	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9998191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv518267	chr4:150777012-150795554	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150790800-150792000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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