Variant report

Variant	rs72728512
Chromosome Location	chr4:150689495-150689496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10003672	1.00[EUR][1000 genomes]
rs10022635	1.00[EUR][1000 genomes]
rs10023439	1.00[EUR][1000 genomes]
rs10032726	1.00[EUR][1000 genomes]
rs10033959	1.00[EUR][1000 genomes]
rs12331422	1.00[EUR][1000 genomes]
rs12332005	1.00[EUR][1000 genomes]
rs28418894	1.00[EUR][1000 genomes]
rs28422949	1.00[EUR][1000 genomes]
rs28461665	1.00[EUR][1000 genomes]
rs28505722	1.00[EUR][1000 genomes]
rs28542198	1.00[EUR][1000 genomes]
rs28582010	1.00[EUR][1000 genomes]
rs28636756	1.00[EUR][1000 genomes]
rs28710322	1.00[EUR][1000 genomes]
rs28711701	1.00[EUR][1000 genomes]
rs28785307	1.00[EUR][1000 genomes]
rs58472290	1.00[EUR][1000 genomes]
rs60610443	1.00[EUR][1000 genomes]
rs72963602	1.00[EUR][1000 genomes]
rs72965305	1.00[EUR][1000 genomes]
rs72965316	1.00[EUR][1000 genomes]
rs9994620	1.00[EUR][1000 genomes]
rs9998191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150687400-150693400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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