Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10003672	1.00[EUR][1000 genomes]
rs10022635	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10023439	1.00[EUR][1000 genomes]
rs10032726	1.00[EUR][1000 genomes]
rs10033959	1.00[EUR][1000 genomes]
rs12331422	1.00[EUR][1000 genomes]
rs12332005	1.00[EUR][1000 genomes]
rs28418894	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28422949	1.00[EUR][1000 genomes]
rs28461665	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28505722	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28542198	1.00[EUR][1000 genomes]
rs28582010	1.00[EUR][1000 genomes]
rs28636756	1.00[EUR][1000 genomes]
rs28642159	0.90[AFR][1000 genomes]
rs28710322	1.00[EUR][1000 genomes]
rs28785307	1.00[EUR][1000 genomes]
rs58472290	1.00[EUR][1000 genomes]
rs60610443	1.00[EUR][1000 genomes]
rs72728512	1.00[EUR][1000 genomes]
rs72963602	1.00[EUR][1000 genomes]
rs72965305	1.00[EUR][1000 genomes]
rs72965316	1.00[EUR][1000 genomes]
rs9994620	1.00[EUR][1000 genomes]
rs9998191	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150685200-150687400	Enhancers	NHEK	skin
2	chr4:150685200-150687600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr4:150685200-150687600	Enhancers	HMEC	breast
4	chr4:150685400-150687400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr4:150685800-150687600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr4:150686000-150686600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:150686000-150687000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:150686200-150687400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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