Variant report

Variant	rs58472290
Chromosome Location	chr4:150808710-150808711
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10003672	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10018313	0.80[AMR][1000 genomes]
rs10022635	1.00[EUR][1000 genomes]
rs10023439	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10026653	0.85[AFR][1000 genomes]
rs10027531	0.80[AMR][1000 genomes]
rs10032726	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10033959	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331422	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12331667	0.80[AMR][1000 genomes]
rs12332005	1.00[EUR][1000 genomes]
rs28380189	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28398845	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28418894	1.00[EUR][1000 genomes]
rs28422949	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28429910	0.92[AFR][1000 genomes]
rs28438692	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28461665	1.00[EUR][1000 genomes]
rs28463011	0.80[AMR][1000 genomes]
rs28493797	0.92[AFR][1000 genomes]
rs28505722	1.00[EUR][1000 genomes]
rs28542198	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28582010	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28585603	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28626905	0.80[AMR][1000 genomes]
rs28636756	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28710322	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28711701	1.00[EUR][1000 genomes]
rs28785307	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57986477	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58881840	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs60610443	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72728512	1.00[EUR][1000 genomes]
rs72963601	0.80[AMR][1000 genomes]
rs72963602	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965303	0.80[AMR][1000 genomes]
rs72965305	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965316	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72965319	1.00[AFR][1000 genomes]
rs72965329	0.97[AFR][1000 genomes]
rs72965331	0.97[AFR][1000 genomes]
rs72967460	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs72967461	0.93[AFR][1000 genomes]
rs72967477	0.81[AFR][1000 genomes]
rs72967480	0.81[AFR][1000 genomes]
rs72969406	0.82[AFR][1000 genomes]
rs7677694	0.80[AMR][1000 genomes]
rs9307861	0.80[AMR][1000 genomes]
rs9884130	0.80[AMR][1000 genomes]
rs9992210	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9994620	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9998191	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150806200-150820400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:150806600-150808800	Enhancers	NH-A	brain
3	chr4:150806600-150818000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:150807200-150808800	Enhancers	NHLF	lung
5	chr4:150807600-150811000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr4:150808400-150808800	Flanking Active TSS	HSMMtube	muscle
7	chr4:150808400-150812200	Weak transcription	HSMM	muscle
8	chr4:150808600-150810800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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