Variant report

Variant	rs72965331
Chromosome Location	chr4:150814873-150814874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10026653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10032726	0.97[AFR][1000 genomes]
rs28380189	0.97[AFR][1000 genomes]
rs28398845	0.97[AFR][1000 genomes]
rs28429910	0.95[AFR][1000 genomes]
rs28438692	0.97[AFR][1000 genomes]
rs28493797	0.95[AFR][1000 genomes]
rs28585603	0.97[AFR][1000 genomes]
rs57159415	0.83[AMR][1000 genomes]
rs57986477	0.97[AFR][1000 genomes]
rs58472290	0.97[AFR][1000 genomes]
rs58881840	0.97[AFR][1000 genomes]
rs59340158	0.83[AMR][1000 genomes]
rs60031939	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963564	1.00[AMR][1000 genomes]
rs72965316	0.95[AFR][1000 genomes]
rs72965319	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965329	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967460	0.97[AFR][1000 genomes]
rs72967461	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967474	0.83[AMR][1000 genomes]
rs72967477	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967480	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969406	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992210	0.97[AFR][1000 genomes]
rs9994620	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150806200-150820400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:150806600-150818000	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links