Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10003672	0.91[AMR][1000 genomes]
rs10026653	0.89[AFR][1000 genomes]
rs10032726	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs28380189	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28398845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28429910	0.98[AFR][1000 genomes]
rs28438692	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28493797	0.98[AFR][1000 genomes]
rs28585603	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57986477	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58472290	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs58881840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60031939	0.82[AFR][1000 genomes]
rs72965316	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs72965319	0.93[AFR][1000 genomes]
rs72965329	0.97[AFR][1000 genomes]
rs72965331	0.97[AFR][1000 genomes]
rs72967460	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967461	1.00[AFR][1000 genomes]
rs72967477	0.84[AFR][1000 genomes]
rs72967480	0.84[AFR][1000 genomes]
rs72969406	0.85[AFR][1000 genomes]
rs9994620	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150830400-150833000	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr4:150830600-150831400	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr4:150831000-150831400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:150831200-150831600	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr4:150831200-150832400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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