Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10026653	0.87[AFR][1000 genomes]
rs10032726	0.92[AFR][1000 genomes]
rs28380189	0.92[AFR][1000 genomes]
rs28398845	0.98[AFR][1000 genomes]
rs28438692	0.98[AFR][1000 genomes]
rs28450228	0.89[AMR][1000 genomes]
rs28493797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28585603	0.98[AFR][1000 genomes]
rs56676520	0.94[AMR][1000 genomes]
rs57986477	0.98[AFR][1000 genomes]
rs58472290	0.92[AFR][1000 genomes]
rs58881840	0.98[AFR][1000 genomes]
rs60031939	0.81[AFR][1000 genomes]
rs72965316	0.90[AFR][1000 genomes]
rs72965319	0.92[AFR][1000 genomes]
rs72965329	0.95[AFR][1000 genomes]
rs72965331	0.95[AFR][1000 genomes]
rs72965338	0.94[AMR][1000 genomes]
rs72967460	0.98[AFR][1000 genomes]
rs72967461	0.98[AFR][1000 genomes]
rs72967477	0.83[AFR][1000 genomes]
rs72967480	0.83[AFR][1000 genomes]
rs72969406	0.84[AFR][1000 genomes]
rs9992210	0.98[AFR][1000 genomes]
rs9994620	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150827200-150831200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:150830400-150833000	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:150830600-150831400	Enhancers	Sigmoid Colon	Sigmoid Colon

Quick Search: