Variant report

Variant	rs10026653
Chromosome Location	chr4:150833273-150833274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10032726	0.85[AFR][1000 genomes]
rs28380189	0.85[AFR][1000 genomes]
rs28398845	0.89[AFR][1000 genomes]
rs28429910	0.87[AFR][1000 genomes]
rs28438692	0.89[AFR][1000 genomes]
rs28493797	0.87[AFR][1000 genomes]
rs28585603	0.89[AFR][1000 genomes]
rs57159415	0.83[AMR][1000 genomes]
rs57986477	0.89[AFR][1000 genomes]
rs58472290	0.85[AFR][1000 genomes]
rs58881840	0.89[AFR][1000 genomes]
rs59340158	0.83[AMR][1000 genomes]
rs60031939	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72963564	1.00[AMR][1000 genomes]
rs72965316	0.84[AFR][1000 genomes]
rs72965319	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965329	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72965331	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967460	0.89[AFR][1000 genomes]
rs72967461	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967474	0.83[AMR][1000 genomes]
rs72967477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72967480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72969406	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9992210	0.89[AFR][1000 genomes]
rs9994620	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv880255	chr4:150777012-150874830	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv932022	chr4:150831733-151419552	Enhancers Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150832200-150833400	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr4:150833000-150833400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:150833000-150833600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr4:150833000-150833600	Enhancers	HUVEC	blood vessel
5	chr4:150833000-150834000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr4:150833200-150833600	Enhancers	Muscle Satellite Cultured Cells	--

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