Variant report

Variant	rs72963564
Chromosome Location	chr4:150764510-150764511
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10023439	0.98[AFR][1000 genomes]
rs10026653	1.00[AMR][1000 genomes]
rs10033959	0.95[AFR][1000 genomes]
rs12331422	0.97[AFR][1000 genomes]
rs12331667	0.94[AFR][1000 genomes]
rs12332005	0.97[AFR][1000 genomes]
rs28582010	0.82[AFR][1000 genomes]
rs28710322	0.98[AFR][1000 genomes]
rs28785307	0.98[AFR][1000 genomes]
rs57159415	0.83[AMR][1000 genomes]
rs59340158	0.83[AMR][1000 genomes]
rs60031939	1.00[AMR][1000 genomes]
rs60610443	0.95[AFR][1000 genomes]
rs72965305	0.82[AFR][1000 genomes]
rs72965319	1.00[AMR][1000 genomes]
rs72965329	1.00[AMR][1000 genomes]
rs72965331	1.00[AMR][1000 genomes]
rs72967461	1.00[AMR][1000 genomes]
rs72967474	0.83[AMR][1000 genomes]
rs72967477	1.00[AMR][1000 genomes]
rs72967480	1.00[AMR][1000 genomes]
rs72969406	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026797	chr4:150246932-151217137	Bivalent Enhancer Enhancers Strong transcription Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1016169	chr4:150670127-150903827	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv537299	chr4:150670127-150903827	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv880254	chr4:150712923-150852782	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:150761200-150770600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr4:150763600-150766000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr4:150764400-150764600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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